From mohammad at mshri.on.ca  Fri Dec 14 06:46:46 2007
From: mohammad at mshri.on.ca (Naveed Mohammad)
Date: Fri, 14 Dec 2007 06:46:46 -0500
Subject: [xml-qstat-d] Active jobs for xml-qstat
Message-ID: <47626D26.7080001@mshri.on.ca>

Hello everyone,

Ok so i have successfully installed cocoon and have gotten xml-qstat to 
run. But i have noticed something weird. When there are jobs running on 
our cluster, the queues are displayed fine with the appropriate 
percentage used, but nothing pops up under "Active Jobs". But when i try 
to launch a job on the cluster as root, then it pops up in Acitve Jobs. 
I'm pretty sure this has to do with a permissions problem somewhere. Can 
somebody please confirm what the proper permissions are suppose to be 
for xml-qstat directory? Also it might have to do with the sgeJob.cgi 
script and how it is installed. Can someone help with this?

Much appreciated...

-- 
Naveed Mohammad
Linux Cluster Administrator
Samuel Lunenfeld Research Institute
Mount Sinai Hospital
600 University Avenue Room 991
Toronto, Ontario
M5G 1X5

email: mohammad at mshri.on.ca


From dag at sonsorol.org  Fri Dec 14 22:06:30 2007
From: dag at sonsorol.org (Chris Dagdigian)
Date: Fri, 14 Dec 2007 22:06:30 -0500
Subject: [xml-qstat-d] Active jobs for xml-qstat
In-Reply-To: <47626D26.7080001@mshri.on.ca>
References: <47626D26.7080001@mshri.on.ca>
Message-ID: <527064CE-C31A-4177-BB87-594D15CA421A@sonsorol.org>


Are you by any chance using SGE 6.1 ?

I bet this is because xml-qstat has not caught up to the fact that in  
SGE 6.1 the default behavior of "qstat -f" now is to show *only* your  
jobs and not the jobs of everyone on the system.

To get the old (default) behavior we need to change the qstat command  
to include an additional argument:  qstat -u '*' <rest of command>

This should be an easy fix, if you are using the pure java version of  
xml-qstat then the command is embedded in the sitemap.xmap file. If  
you are using an older version of xml-qstat that requires the perl  
script to cache SGE info then you'll need to alter the perl code.

The next release of xml-qstat will have a compatibility-mode switch  
for version 6.1 behavior just as we currently detect an old version of  
SGE that displayed slightly different XML output.

Regards,
Chris




On Dec 14, 2007, at 6:46 AM, Naveed Mohammad wrote:

> Hello everyone,
>
> Ok so i have successfully installed cocoon and have gotten xml-qstat  
> to
> run. But i have noticed something weird. When there are jobs running  
> on
> our cluster, the queues are displayed fine with the appropriate
> percentage used, but nothing pops up under "Active Jobs". But when i  
> try
> to launch a job on the cluster as root, then it pops up in Acitve  
> Jobs.
> I'm pretty sure this has to do with a permissions problem somewhere.  
> Can
> somebody please confirm what the proper permissions are suppose to be
> for xml-qstat directory? Also it might have to do with the sgeJob.cgi
> script and how it is installed. Can someone help with this?
>
> Much appreciated...
>
> -- 
> Naveed Mohammad
> Linux Cluster Administrator
> Samuel Lunenfeld Research Institute
> Mount Sinai Hospital
> 600 University Avenue Room 991
> Toronto, Ontario
> M5G 1X5
>
> email: mohammad at mshri.on.ca
>
> _______________________________________________
> xml-qstat-d mailing list
> xml-qstat-d at mail.bioteam.net
> http://mail.bioteam.net/mailman/listinfo/xml-qstat-d


From mohammad at mshri.on.ca  Fri Dec 14 23:31:21 2007
From: mohammad at mshri.on.ca (Naveed Mohammad)
Date: Fri, 14 Dec 2007 23:31:21 -0500
Subject: [xml-qstat-d] Active jobs for xml-qstat
Message-ID: <A249C197854D3442BDAE4C6BA4D5553C011F7DB4@ex1.ad.mshri.on.ca>

Yes I am using SGE 6.1. I thought about making that change by adding "u" to qstat but wasn't sure that was the reason why active jobs were not being displayed. This makes sense. Thank you so much your help.

Regards,

Naveed

-----Original Message-----
From: Chris Dagdigian <dag at sonsorol.org>
To: Naveed Mohammad <mohammad at mshri.on.ca>; xml-qstat-d at mail.bioteam.net <xml-qstat-d at mail.bioteam.net>
Sent: Fri Dec 14 22:06:30 2007
Subject: Re: [xml-qstat-d] Active jobs for xml-qstat


Are you by any chance using SGE 6.1 ?

I bet this is because xml-qstat has not caught up to the fact that in  
SGE 6.1 the default behavior of "qstat -f" now is to show *only* your  
jobs and not the jobs of everyone on the system.

To get the old (default) behavior we need to change the qstat command  
to include an additional argument:  qstat -u '*' <rest of command>

This should be an easy fix, if you are using the pure java version of  
xml-qstat then the command is embedded in the sitemap.xmap file. If  
you are using an older version of xml-qstat that requires the perl  
script to cache SGE info then you'll need to alter the perl code.

The next release of xml-qstat will have a compatibility-mode switch  
for version 6.1 behavior just as we currently detect an old version of  
SGE that displayed slightly different XML output.

Regards,
Chris




On Dec 14, 2007, at 6:46 AM, Naveed Mohammad wrote:

> Hello everyone,
>
> Ok so i have successfully installed cocoon and have gotten xml-qstat  
> to
> run. But i have noticed something weird. When there are jobs running  
> on
> our cluster, the queues are displayed fine with the appropriate
> percentage used, but nothing pops up under "Active Jobs". But when i  
> try
> to launch a job on the cluster as root, then it pops up in Acitve  
> Jobs.
> I'm pretty sure this has to do with a permissions problem somewhere.  
> Can
> somebody please confirm what the proper permissions are suppose to be
> for xml-qstat directory? Also it might have to do with the sgeJob.cgi
> script and how it is installed. Can someone help with this?
>
> Much appreciated...
>
> -- 
> Naveed Mohammad
> Linux Cluster Administrator
> Samuel Lunenfeld Research Institute
> Mount Sinai Hospital
> 600 University Avenue Room 991
> Toronto, Ontario
> M5G 1X5
>
> email: mohammad at mshri.on.ca
>
> _______________________________________________
> xml-qstat-d mailing list
> xml-qstat-d at mail.bioteam.net
> http://mail.bioteam.net/mailman/listinfo/xml-qstat-d

-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mail.bioteam.net/pipermail/xml-qstat-d/attachments/20071214/855e899f/attachment.html 

From mohammad at mshri.on.ca  Tue Dec 18 04:51:25 2007
From: mohammad at mshri.on.ca (Naveed Mohammad)
Date: Tue, 18 Dec 2007 04:51:25 -0500
Subject: [xml-qstat-d] xml-qstat for Internet Explorer
Message-ID: <4767981D.4010104@mshri.on.ca>

Hello everyone,

I believe that xml-qstat does not support Internet Explorer. Does anyone 
know why this is? If so has anyone created a work around to get 
xml-qstat to display in Internet Explorer?

Much appreciated,

-- 
Naveed Mohammad
Linux Cluster Administrator
Samuel Lunenfeld Research Institute
Mount Sinai Hospital
600 University Avenue Room 991
Toronto, Ontario
M5G 1X5

email: mohammad at mshri.on.ca


From rayrayson at gmail.com  Tue Dec 18 20:25:04 2007
From: rayrayson at gmail.com (Rayson Ho)
Date: Tue, 18 Dec 2007 20:25:04 -0500
Subject: [xml-qstat-d] xml-qstat for Internet Explorer
In-Reply-To: <4767981D.4010104@mshri.on.ca>
References: <4767981D.4010104@mshri.on.ca>
Message-ID: <a0ba9d430712181725y4a45ea1dj3a93350818a65359@mail.gmail.com>

I assume it's due to the lack of full XHTML support in IE:

http://en.wikipedia.org/wiki/XHTML#Adoption

Rayson



On Dec 18, 2007 4:51 AM, Naveed Mohammad <mohammad at mshri.on.ca> wrote:
> Hello everyone,
>
> I believe that xml-qstat does not support Internet Explorer. Does anyone
> know why this is? If so has anyone created a work around to get
> xml-qstat to display in Internet Explorer?
>
> Much appreciated,
>
> --
> Naveed Mohammad
> Linux Cluster Administrator
> Samuel Lunenfeld Research Institute
> Mount Sinai Hospital
> 600 University Avenue Room 991
> Toronto, Ontario
> M5G 1X5
>
> email: mohammad at mshri.on.ca
>
> _______________________________________________
> xml-qstat-d mailing list
> xml-qstat-d at mail.bioteam.net
> http://mail.bioteam.net/mailman/listinfo/xml-qstat-d
>